ASBMB Today is reporting on our recently published article on new proteomic signatures to distinguish between Zika and dengue infections (Allgoewer et al.) in Molecular & Cellular Proteomics. In a collaboration between the Vogel lab (proteomics) and the Ghedin lab (genomics) we were able to retrieve robust conclusions from a challenging data set.
The Vogel lab identifies new proteomic signatures to distinguish between Zika and dengue infections using state-of-the-art mass spectrometry: Kristina Allgoewer and Shuvadeep Maity publish their analysis of human serum samples from Zika and dengue patients in Molecular & Cellular Proteomics. Three of the differentially expressed proteins, i.e. Fibrinogen Alpha, Platelet Factor 4 Variant 1, and Pro-Platelet Basic Protein, predict Zika virus infection at a ∼70% true positive and 6% false positive rate.
Congratulations to Funda Kar, who was awarded the NYU Biology Department Chair’s Fellowship for demonstrating outstanding research potential!
We are proud to be part of the Chan Zuckerberg Neurodegeneration Challenge Network with our our collaborator Esteban Mazzoni (NYU Biology). The project investigates new functions of the proteasome, started by former lab member Shuvadeep Maity (now faculty at BITS Pilani).
Congratulations to former lab member Gustavo Silva (now faculty at Duke University) for publication of his work on the structural changes in the K63 ubiquitinated ribosome.
A new proteomics workflow from the Vogel Lab: Burcu Vitrinel publishes a protein quantification method in ACS Omega. The workflow uses chemical peptide labeling, does not require specific equipment other than cell lysis tools, and quantifies >2500 proteins with high reproducibility.
Congrats to Burcu Vitrinel on receiving the Dean’s Dissertation Fellowship!
We are excited to participate in a nation-wide effort to understand the response to flu vaccines!
Congrats to Justin Rendleman on receiving the Steve Kazianis Memorial Award!
Congrats to Burcu Vitrinel on receiving the Fleur Strand Graduate Fellowship!
The Vogel Lab appears in a Technology Feature in Nature Methods: “A dream of single-cell proteomics”.
Congratulations to Burcu Vitrinel, Funda Kar, Shuvadeep Maity, and Justin Rendleman on the publication of the minireview “Exploiting Interdata Relationships in Next-generation Proteomics Analysis”!
March / April 2019:
We welcome Dan Munro, a new postdoc, to our lab! Congratulations to Burcu Vitrinel for achieving the best flash talk award at the Woodshole Meeting and to Amy Lei for receiving the Master’s research grant!
Congratulations to Justin Rendleman for receiving the Dean’s Dissertation award! And to Kristen Avallone, Prianka Saha, and Juan Pelez for receiving the Dean’s Undergraduate Research Fellowship!
Congratulations to Justin Rendleman, Zhe Cheng, and Shuvadeep Maity, on the publication of “New insights into the cellular temporal response to proteostatic stress” in Elife!
Congratulations, Burcu Vitrinel, on receiving the Dr Charlotte A. Pann Memorial Award of NYU’s Department of Biology!
Burcu Vitrinel received a predoctoral fellowship by the American Heart Association! Congratulations!
Matteo (Yunbin) Zhang and Amy Lei presented posters on their work during the Undergraduate Research Conference.
And we’re celebrating Konstantine Tchourine’s PhD defense. Congratulations, Kostya!
Burcu Vitrinel and Funda Mujgan Kar received a travel award for the first annual North American mass spectrometry summer school! Congratulations!
Konstantine Tchourine’s paper was accepted at Cell Reports. Shuvadeep Maity and Burcu Vitrinel received travel fellowships for US HUPO. Kristina Allgoewer received the DAAD Graduate Student Fellowship (German Academic Exchange Organization). Matteo (Yunbin) Zhang was accepted into the Data Science Master’s program at Harvard. Manar Elzaky received the NYU Master’s Students Research Award!
And the Vogel lab received an NIH MIRA award. Woo woo woo!
Happy 7th birthday, Vogel lab!
Congratulations to Guoshou Teo and Matteo (Yunbin) Zhang on their recent publication!
Congratulations to Justin Rendleman for receiving the NYU Biology Department Kopac Service Award!
A time to celebrate:
Congratulations to our boss, Associate Professor Christine Vogel, on her tenure!
Congratulations to Gustavo Silva on his new position at Duke University!
And congratulations to Kristina Allgoewer on defending her Master’s thesis!
Congratulations to Amy Lei and Matteo (Yunbin) Zhang for receiving the Dean’s Undergraduate Research Fellowship! Congratulations to Gustavo Silva for being featured at the Annual Post-doctoral Research Symposium! Welcome to Funda Mujgan Kar to the Vogel-Hochwagen labs and congrats on passing the Qualifying Exam! And finally, congratulations to Kolin Clark for graduating!
Christine (The Boss) was selected as a winner of the 2017 Robert J. Cotter New Investigator Award of the US Human Proteome Organization. Woo woo woo!
Another Vogel lab baby has been born — congratulations to Shuvadeep and Gargi!
October / November 2016:
Congratulations to Zhe Cheng for becoming the first Vogel Lab PhD!!!!! Well done and all the best for the future!
Also congratulations to Koby on his first publication (he is featured in a book).
We won one of Biognosys’ Research Challenge Awards!
We welcome all our summer students: Fabian from Puerto Rico (NYU Bio-SURP), Christy from Ethiopia (NYU GSTEM), and our two NYU K12 ARISE students Chrislie and Shukai from NYC!
Many exciting happenings: we are welcoming Amy, Matteo, and Fabian to our lab — they are our summer research undergraduates and will be pushing the frontiers of science in various ways!
Also, the Vogel lab is part of two (two!!!!!) seedgrants to establish new projects and collaborations: one with Brian Parker sponsored by the NYU Center for Data Science; one with Cristina Alberini (NYU Center for Neural Science) sponsored by the Dean of Science. Woo woo woo!
And finally: we are making progress in getting our Orbi Elite back on track. But that’s a different story…
Kostya, Zhe, and Justin presented posters at the Annual CGSB Symposium — congratulations to Zhe and Justin for winning the Wiley Poster Prize!
Boss on NYU’s Twitter as part of the “Why I’m here” project
News about the news — Zhe’s paper appears everywhere:
- NYU press release: http://www.nyu.edu/about/news-publications/news/2016/01/25/scientists-shed-new-light-on-workings-of-genetic-regulation.html
- Scicast: https://scicasts.com/genomics/2031-epigenomics/10574-research-sheds-new-light-on-genetic-regulation-and-protein-signalling/
- GenEngNews: http://www.genengnews.com/gen-news-highlights/gene-regulation-includes-rna-peaks-and-protein-plateaus/81252286/
And we made the cover!
December 2015 / January 2016:
Zhe’s paper in Molecular Systems Biology was accepted for publication!
Congratulations to Gustavo Silva for receiving an NIH K99 award!!!!!!! Fantastic!
… and other older news :).
But not to forget:
January 11, 2011:
The Vogel lab was born. 🙂